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pangolin — Implements the dynamic nomenclature of SARS-CoV-2 lineages (Pango nomenclature). More information: <

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Problem

How to use the pangolin command: Implements the dynamic nomenclature of SARS-CoV-2 lineages (Pango nomenclature). More information: <https://cov-lineages.org/resources/pangolin/usage.html>.

Solution

pangolin — Implements the dynamic nomenclature of SARS-CoV-2 lineages (Pango nomenclature). More information: <https://cov-lineages.org/resources/pangolin/usage.html>.

Run pangolin on the specified FASTA file:
pangolin {{path/to/file.fa}}


Use the specified analysis engine:
pangolin --analysis-mode {{accurate|fast|pangolearn|usher}}

Code Snippets

Run `pangolin` on the specified FASTA file

pangolin {{path/to/file.fa}}

Use the specified analysis engine

pangolin --analysis-mode {{accurate|fast|pangolearn|usher}}

Context

tldr-pages: common/pangolin

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