snakefmt — Format Snakemake files. More information: <https://github.com/snakemake/snakefmt#usage>.

Format a specific Snakefile

snakefmt {{path/to/snakefile}}

Format all Snakefiles recursively in a specific directory

snakefmt {{path/to/directory}}

Format a file using a specific configuration file

snakefmt --config {{path/to/config.toml}} {{path/to/snakefile}}

Format a file using a specific maximum line length

snakefmt --line-length {{100}} {{path/to/snakefile}}

Display the changes that would be performed without performing them (dry-run)

snakefmt --diff {{path/to/snakefile}}