snippetbashTip
esearch — Perform a new Entrez search using terms in indexed fields. It is part of the `edirect` package. More
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commandnewsearchperformcliesearchentrezusing
linux
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How to use the
esearch command: Perform a new Entrez search using terms in indexed fields. It is part of the edirect package. More information: <https://www.ncbi.nlm.nih.gov/books/NBK179288/>.Solution
esearch — Perform a new Entrez search using terms in indexed fields. It is part of the edirect package. More information: <https://www.ncbi.nlm.nih.gov/books/NBK179288/>.Search the pubmed database for selective serotonin reuptake inhibitor:
esearch -db pubmed -query "{{selective serotonin reuptake inhibitor}}"Search the protein database using a query and
regex:esearch -db {{protein}} -query '{{Escherichia*}}'Search the nucleotide database for sequences whose metadata contain insulin and rodents:
esearch -db nuccore -query "{{insulin [PROT] AND rodents [ORGN]}}"Display help:
esearch {{[-h|-help]}}Code Snippets
Search the pubmed database for selective serotonin reuptake inhibitor
esearch -db pubmed -query "{{selective serotonin reuptake inhibitor}}"Search the protein database using a query and `regex`
esearch -db {{protein}} -query '{{Escherichia*}}'Search the nucleotide database for sequences whose metadata contain insulin and rodents
esearch -db nuccore -query "{{insulin [PROT] AND rodents [ORGN]}}"Display help
esearch {{[-h|-help]}}Context
tldr-pages: linux/esearch
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