HiveBrain v1.2.0
Get Started
← Back to all entries
snippetbashTip

sh5util — Merge HDF5 files produced by the `sacct_gather_profile` plugin. More information: <https://slurm.sch

Submitted by: @import:tldr-pages··
0
Viewed 0 times
thecommandfileshdf5clish5utilmergeproduced
linux

Problem

How to use the sh5util command: Merge HDF5 files produced by the sacct_gather_profile plugin. More information: <https://slurm.schedmd.com/sh5util.html>.

Solution

sh5util — Merge HDF5 files produced by the sacct_gather_profile plugin. More information: <https://slurm.schedmd.com/sh5util.html>.

Merge HDF5 files produced on each allocated node for the specified job or step:
sh5util {{[-j|--jobs]}} {{job_id|job_id.step_id}}


Extract one or more data series from a merged job file:
sh5util {{[-j|--jobs]}} {{job_id|job_id.step_id}} {{[-E|--extract]}} {{[-i|--input]}} {{path/to/file.h5}} {{[-s|--series]}} {{Energy|Filesystem|Network|Task}}


Extract one data item from all nodes in a merged job file:
sh5util {{[-j|--jobs]}} {{job_id|job_id.step_id}} {{[-I|--item-extract]}} {{[-s|--series]}} {{Energy|Filesystem|Network|Task}} {{[-d|--data]}} {{data_item}}

Code Snippets

Merge HDF5 files produced on each allocated node for the specified job or step

sh5util {{[-j|--jobs]}} {{job_id|job_id.step_id}}

Extract one or more data series from a merged job file

sh5util {{[-j|--jobs]}} {{job_id|job_id.step_id}} {{[-E|--extract]}} {{[-i|--input]}} {{path/to/file.h5}} {{[-s|--series]}} {{Energy|Filesystem|Network|Task}}

Extract one data item from all nodes in a merged job file

sh5util {{[-j|--jobs]}} {{job_id|job_id.step_id}} {{[-I|--item-extract]}} {{[-s|--series]}} {{Energy|Filesystem|Network|Task}} {{[-d|--data]}} {{data_item}}

Context

tldr-pages: linux/sh5util

Revisions (0)

No revisions yet.